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prkd1 protein kinase D1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110497702, updated on 15-Mar-2024

Summary

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Gene symbol
prkd1
Gene description
protein kinase D1
See related
Ensembl:ENSOMYG00000037116
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
20
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 19 NC_048583.1 (33610892..33728505)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 19 NC_035095.1 (30142270..30259252)

Chromosome 19 - NC_048583.1Genomic Context describing neighboring genes Neighboring gene sec1 family domain containing 1 Neighboring gene G2/M-phase specific E3 ubiquitin protein ligase Neighboring gene forkhead box G1a Neighboring gene spectrin, beta, non-erythrocytic 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048583.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33610892..33728505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021573992.2 → XP_021429667.2  serine/threonine-protein kinase D1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7TME5
    Related
    ENSOMYP00000083011.2, ENSOMYT00000090419.2
    Conserved Domains (4) summary
    cd01239
    Location:323 → 452
    PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
    cd14082
    Location:489 → 748
    STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    cd20839
    Location:44 → 115
    C1_PKD1_rpt1; first protein kinase C conserved region 1 (C1 domain) found in protein kinase D (PKD) and similar proteins
    cl00040
    Location:150 → 241
    C1; protein kinase C conserved region 1 (C1 domain) superfamily

  2. XM_021573990.2 → XP_021429665.2  serine/threonine-protein kinase D1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7TJU6
    Related
    ENSOMYP00000082793.2, ENSOMYT00000090189.2
    Conserved Domains (4) summary
    cd01239
    Location:400 → 529
    PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
    cd14082
    Location:566 → 825
    STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    cd20839
    Location:121 → 192
    C1_PKD1_rpt1; first protein kinase C conserved region 1 (C1 domain) found in protein kinase D (PKD) and similar proteins
    cl00040
    Location:227 → 318
    C1; protein kinase C conserved region 1 (C1 domain) superfamily
Nucleotide Protein
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