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zcchc17 zinc finger, CCHC domain containing 17 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110496496, updated on 15-Mar-2024

Summary

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Gene symbol
zcchc17
Gene description
zinc finger, CCHC domain containing 17
See related
Ensembl:ENSOMYG00000041090
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 18 NC_048582.1 (52563530..52570280)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 18 NC_035094.1 (45232764..45240522)

Chromosome 18 - NC_048582.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA-binding family member 1 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene small nuclear ribonucleoprotein 40 (U5) Neighboring gene fatty acid binding protein 3, muscle and heart Neighboring gene doublecortin-like kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein of 40 kDa
Names
zinc finger CCHC-type containing 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048582.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    52563530..52570280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036953148.1 → XP_036809043.1  nucleolar protein of 40 kDa

    UniProtKB/TrEMBL
    A0A8L0DJ51
    Conserved Domains (1) summary
    cd05686
    Location:18 → 91
    S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...

  2. XM_036953149.1 → XP_036809044.1  nucleolar protein of 40 kDa

    UniProtKB/TrEMBL
    A0A8L0DJ51
    Conserved Domains (1) summary
    cd05686
    Location:18 → 91
    S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...

  3. XM_036953150.1 → XP_036809045.1  nucleolar protein of 40 kDa

    UniProtKB/TrEMBL
    A0A8L0DJ51
    Related
    ENSOMYP00000123160.1, ENSOMYT00000165542.1
    Conserved Domains (1) summary
    cd05686
    Location:18 → 91
    S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
Nucleotide Protein
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