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sp1 sp1 transcription factor [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110494799, updated on 15-Mar-2024

Summary

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Gene symbol
sp1
Gene description
sp1 transcription factor
See related
Ensembl:ENSOMYG00000030362
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 17 NC_048581.1 (86699538..86711214)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 17 NC_035093.1 (70348386..70358145, complement)

Chromosome 17 - NC_048581.1Genomic Context describing neighboring genes Neighboring gene TAR (HIV) RNA binding protein 2 Neighboring gene thymocyte expressed, positive selection associated 1 Neighboring gene cell division cycle-associated protein 7 Neighboring gene anti-Muellerian hormone type-2 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048581.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    86699538..86711214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021570134.2 → XP_021425809.1  transcription factor Sp1 isoform X1

    UniProtKB/TrEMBL
    A0A060YFT3, A0A8C7W334
    Related
    ENSOMYP00000065547.1, ENSOMYT00000071386.2
    Conserved Domains (3) summary
    sd00017
    Location:519 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:577 → 599
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:563 → 586
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021570135.2 → XP_021425810.1  transcription factor Sp1 isoform X2

    UniProtKB/TrEMBL
    A0A060YFT3
    Related
    ENSOMYP00000122640.1, ENSOMYT00000121164.1
    Conserved Domains (3) summary
    sd00017
    Location:512 → 534
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:570 → 592
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:556 → 579
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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