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atxn10 ataxin 10 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110490144, updated on 15-Mar-2024

Summary

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Gene symbol
atxn10
Gene description
ataxin 10
See related
Ensembl:ENSOMYG00000017104
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 15 NC_048579.1 (45597961..45610166, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 15 NC_035091.1 (41396641..41407384, complement)

Chromosome 15 - NC_048579.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110490142 Neighboring gene wingless-type MMTV integration site family, member 7Ba Neighboring gene transcription intermediary factor 1-alpha Neighboring gene uncharacterized LOC110490151

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048579.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    45597961..45610166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021563343.2 → XP_021419018.1  ataxin-10

    UniProtKB/TrEMBL
    A0A060VQB3, A0A8C7QF14
    Related
    ENSOMYP00000036797.2, ENSOMYT00000040176.2
    Conserved Domains (1) summary
    pfam09759
    Location:374 → 471
    Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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