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SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110478541, updated on 15-Mar-2024

Summary

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Gene symbol
SMARCD1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Locus tag
RLOC_00009186
See related
Ensembl:ENSLSDG00000016055
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 29
Exon count:
13
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 29 NC_042594.1 (896884..903917)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657140.1 (312881..319913, complement)

Chromosome 29 - NC_042594.1Genomic Context describing neighboring genes Neighboring gene Rac GTPase activating protein 1 Neighboring gene acid sensing ion channel subunit 1 Neighboring gene uncharacterized LOC116184548 Neighboring gene glycerol-3-phosphate dehydrogenase 1 Neighboring gene cytochrome c oxidase assembly protein COX14 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042594.1 Reference lonStrDom2 Primary Assembly

    Range
    896884..903917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021545229.2 → XP_021400904.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

    UniProtKB/TrEMBL
    A0A218UC42
    Related
    ENSLSDP00000022820.1
    Conserved Domains (1) summary
    cd17674
    Location:290 → 366
    SWIB_BAF60A; SWIB domain found in BRG1-associated factor 60A (BAF60A) and similar proteins
Nucleotide Protein
Heading Accession and Version

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