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CHFR checkpoint with forkhead and ring finger domains [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110478084, updated on 15-Mar-2024

Summary

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Gene symbol
CHFR
Gene description
checkpoint with forkhead and ring finger domains
Locus tag
RLOC_00014488
See related
Ensembl:ENSLSDG00000013161
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
18
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 15 NC_042581.1 (7403845..7425260, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657119.1 (3792740..3814155)

Chromosome 15 - NC_042581.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110478085 Neighboring gene golgin A3 Neighboring gene fibrosin like 1 Neighboring gene uncharacterized LOC110478122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CHFR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042581.1 Reference lonStrDom2 Primary Assembly

    Range
    7403845..7425260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021544489.1 → XP_021400164.1  E3 ubiquitin-protein ligase CHFR

    UniProtKB/TrEMBL
    A0A218V5C2
    Related
    ENSLSDP00000018443.1, ENSLSDT00000020908.1
    Conserved Domains (3) summary
    cd00060
    Location:17 → 104
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cd16503
    Location:315 → 358
    RING-HC_CHFR; RING finger, HC subclass, found in checkpoint with forkhead and RING finger domains protein (CHFR)
    cl28410
    Location:313 → 514
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version

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