U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPN7 calpain 7 [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110477529, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CAPN7
Gene description
calpain 7
Locus tag
RLOC_00013642
See related
Ensembl:ENSLSDG00000017990
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
Calpain-7
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 2 NC_042567.1 (43090175..43122216, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657091.1 (383918..415959)

Chromosome 2 - NC_042567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110477532 Neighboring gene methyltransferase 6, tRNA N3-cytidine Neighboring gene uncharacterized LOC116183300 Neighboring gene SH3 domain binding protein 5 Neighboring gene uncharacterized LOC110477528 Neighboring gene phosphoinositide-3-kinase regulatory subunit 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042567.1 Reference lonStrDom2 Primary Assembly

    Range
    43090175..43122216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021543359.1 → XP_021399034.1  calpain-7 isoform X1

    UniProtKB/TrEMBL
    A0A218UCY0
    Related
    ENSLSDP00000025753.1, ENSLSDT00000028933.1
    Conserved Domains (4) summary
    smart00720
    Location:689 → 810
    calpain_III; calpain_III domain
    cd00044
    Location:214 → 538
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:85 → 159
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cd02681
    Location:6 → 76
    MIT_calpain7_1; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

  2. XM_021543360.1 → XP_021399035.1  calpain-7 isoform X2

    Conserved Domains (4) summary
    smart00720
    Location:645 → 766
    calpain_III; calpain_III domain
    cd00044
    Location:170 → 494
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:41 → 115
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cl00299
    Location:1 → 32
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.