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MEF2C myocyte enhancer factor 2C [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110476527, updated on 15-Mar-2024

Summary

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Gene symbol
MEF2C
Gene description
myocyte enhancer factor 2C
Locus tag
RLOC_00012408
See related
Ensembl:ENSLSDG00000017141
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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See MEF2C in Genome Data Viewer
Location:
chromosome: Z
Exon count:
16
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) Z NC_042595.1 (14480058..14611255)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657041.1 (4705766..4836984)

Chromosome Z - NC_042595.1Genomic Context describing neighboring genes Neighboring gene histone H2B 1/2/3/4/6 Neighboring gene centrin 3 Neighboring gene uncharacterized LOC110476528 Neighboring gene uncharacterized LOC110476529 Neighboring gene transmembrane protein 161B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocyte-specific enhancer factor 2C
Names
Myocyte-specific enhancer factor 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042595.1 Reference lonStrDom2 Primary Assembly

    Range
    14480058..14611255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021541575.1 → XP_021397250.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  2. XM_021541583.2 → XP_021397258.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  3. XM_021541585.2 → XP_021397260.1  myocyte-specific enhancer factor 2C isoform X2

    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  4. XM_021541580.2 → XP_021397255.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  5. XM_021541577.2 → XP_021397252.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  6. XM_021541574.2 → XP_021397249.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Related
    ENSLSDP00000024440.1
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  7. XM_021541586.2 → XP_021397261.1  myocyte-specific enhancer factor 2C isoform X3

    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  8. XM_021541589.2 → XP_021397264.1  myocyte-specific enhancer factor 2C isoform X5

    Related
    ENSLSDP00000024437.1
    Conserved Domains (2) summary
    COG5068
    Location:1 → 324
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  9. XM_021541588.2 → XP_021397263.1  myocyte-specific enhancer factor 2C isoform X4

    Related
    ENSLSDP00000024436.1
    Conserved Domains (2) summary
    COG5068
    Location:1 → 245
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  10. XM_021541578.2 → XP_021397253.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  11. XM_021541581.2 → XP_021397256.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A218V692
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 153
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
Nucleotide Protein
Heading Accession and Version

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