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GOPC golgi associated PDZ and coiled-coil motif containing [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110476138, updated on 15-Mar-2024

Summary

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Gene symbol
GOPC
Gene description
golgi associated PDZ and coiled-coil motif containing
Locus tag
RLOC_00000991
See related
Ensembl:ENSLSDG00000001595
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
GOPC_0
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 3 NC_042568.1 (64645822..64668992)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657024.1 (7..23752, complement)

Chromosome 3 - NC_042568.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F1 Neighboring gene nephrocan Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit Neighboring gene Golgi-associated PDZ and coiled-coil motif-containing protein Neighboring gene discoidin, CUB and LCCL domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated PDZ and coiled-coil motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042568.1 Reference lonStrDom2 Primary Assembly

    Range
    64645822..64668992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021540849.2 → XP_021396524.1  Golgi-associated PDZ and coiled-coil motif-containing protein

    UniProtKB/TrEMBL
    A0A218UG02
    Related
    ENSLSDP00000002011.1
    Conserved Domains (2) summary
    cd00992
    Location:282 → 364
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl25732
    Location:30 → 272
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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