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WASHC2C WASH complex subunit 2C [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110475095, updated on 15-Mar-2024

Summary

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Gene symbol
WASHC2C
Gene description
WASH complex subunit 2C
Locus tag
RLOC_00002433
See related
Ensembl:ENSLSDG00000016702
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
FAM21C
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
32
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 6 NC_042572.1 (17231912..17267816, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018654785.1 (220123..256027, complement)

Chromosome 6 - NC_042572.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene zinc finger AN1-type containing 4 Neighboring gene uncharacterized LOC110475131 Neighboring gene beta-microseminoprotein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retromer complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 2C
Names
WASH complex subunit FAM21C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042572.1 Reference lonStrDom2 Primary Assembly

    Range
    17231912..17267816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021538983.1 → XP_021394658.1  WASH complex subunit 2C isoform X1

    UniProtKB/TrEMBL
    A0A218UWM4
    Conserved Domains (1) summary
    pfam15255
    Location:949 → 1087
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  2. XM_021539000.2 → XP_021394675.1  WASH complex subunit 2C isoform X3

    UniProtKB/TrEMBL
    A0A218UWM4
    Related
    ENSLSDP00000023725.1
    Conserved Domains (1) summary
    pfam15255
    Location:930 → 1068
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  3. XM_021538991.2 → XP_021394666.1  WASH complex subunit 2C isoform X2

    UniProtKB/TrEMBL
    A0A218UWM4
    Related
    ENSLSDP00000023723.1
    Conserved Domains (1) summary
    pfam15255
    Location:947 → 1085
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  4. XM_021539008.2 → XP_021394683.1  WASH complex subunit 2C isoform X4

    UniProtKB/TrEMBL
    A0A218UWM4
    Related
    ENSLSDP00000023728.1
    Conserved Domains (1) summary
    pfam15255
    Location:942 → 1066
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  5. XM_021539024.2 → XP_021394699.1  WASH complex subunit 2C isoform X5

    UniProtKB/TrEMBL
    A0A218UWM4
    Conserved Domains (1) summary
    pfam15255
    Location:869 → 1007
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  6. XM_021539016.2 → XP_021394691.1  WASH complex subunit 2C isoform X5

    UniProtKB/TrEMBL
    A0A218UWM4
    Related
    ENSLSDP00000023733.1
    Conserved Domains (1) summary
    pfam15255
    Location:869 → 1007
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region
Nucleotide Protein
Heading Accession and Version

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