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PPP1R13B protein phosphatase 1 regulatory subunit 13B [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110469791, updated on 15-Mar-2024

Summary

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Gene symbol
PPP1R13B
Gene description
protein phosphatase 1 regulatory subunit 13B
Locus tag
RLOC_00005582
See related
Ensembl:ENSLSDG00000016854
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 5 NC_042571.1 (9703475..9771321)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018655527.1 (433661..501590, complement)

Chromosome 5 - NC_042571.1Genomic Context describing neighboring genes Neighboring gene tudor domain containing 9 Neighboring gene RD3 like Neighboring gene uncharacterized LOC116183703 Neighboring gene ATP synthase membrane subunit j Neighboring gene zinc finger FYVE-type containing 21 Neighboring gene X-ray repair cross complementing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables p53 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptosis-stimulating of p53 protein 1
Names
Apoptosis-stimulating of p53 protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042571.1 Reference lonStrDom2 Primary Assembly

    Range
    9703475..9771321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021528906.2 → XP_021384581.1  apoptosis-stimulating of p53 protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A218UQS3
    Related
    ENSLSDP00000023968.1
    Conserved Domains (7) summary
    cd11954
    Location:1078 → 1134
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    PHA03247
    Location:505 → 858
    PHA03247; large tegument protein UL36; Provisional
    TIGR02169
    Location:145 → 325
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    sd00045
    Location:948 → 974
    ANK; ANK repeat [structural motif]
    cd17224
    Location:2 → 86
    RA_ASPP1; Ras-associating (RA) domain found in apoptosis-stimulating protein of p53 protein 1 (ASPP1)
    pfam12796
    Location:948 → 1034
    Ank_2; Ankyrin repeats (3 copies)
    NF033201
    Location:828 → 947
    Vip_LPXTG_Lm; cell invasion LPXTG protein Vip

  2. XM_021528909.2 → XP_021384584.1  apoptosis-stimulating of p53 protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A218UQS3
    Conserved Domains (7) summary
    cd11954
    Location:1024 → 1080
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    PHA03247
    Location:356 → 804
    PHA03247; large tegument protein UL36; Provisional
    sd00045
    Location:894 → 920
    ANK; ANK repeat [structural motif]
    cd17224
    Location:10 → 92
    RA_ASPP1; Ras-associating (RA) domain found in apoptosis-stimulating protein of p53 protein 1 (ASPP1)
    pfam12796
    Location:894 → 980
    Ank_2; Ankyrin repeats (3 copies)
    pfam15558
    Location:155 → 329
    DUF4659; Domain of unknown function (DUF4659)
    NF033201
    Location:774 → 893
    Vip_LPXTG_Lm; cell invasion LPXTG protein Vip
Nucleotide Protein
Heading Accession and Version

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