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NTN4 netrin 4 [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110469340, updated on 15-Mar-2024

Summary

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Gene symbol
NTN4
Gene description
netrin 4
Locus tag
RLOC_00000577
See related
Ensembl:ENSLSDG00000016588
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
Netrin-4
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
9
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 1A NC_042566.1 (19799161..19843235)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018655393.1 (1098446..1142666)

Chromosome 1A - NC_042566.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase domain containing 1 Neighboring gene small nuclear ribonucleoprotein polypeptide F Neighboring gene uncharacterized LOC110469386 Neighboring gene ubiquitin specific peptidase 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042566.1 Reference lonStrDom2 Primary Assembly

    Range
    19799161..19843235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021527964.2 → XP_021383639.1  netrin-4

    UniProtKB/TrEMBL
    A0A218VBJ5
    Related
    ENSLSDP00000023578.1
    Conserved Domains (5) summary
    smart00180
    Location:358 → 409
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:224 → 283
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03578
    Location:480 → 589
    NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
    pfam00053
    Location:295 → 355
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:6 → 223
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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