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TRMT13 tRNA methyltransferase 13 homolog [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110467820, updated on 15-Mar-2024

Summary

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Gene symbol
TRMT13
Gene description
tRNA methyltransferase 13 homolog
Locus tag
RLOC_00002154
See related
Ensembl:ENSLSDG00000010738
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 8 NC_042574.1 (12157954..12163710, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018654728.1 (102309..108065, complement)

Chromosome 8 - NC_042574.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide branched chain transacylase E2 Neighboring gene leucine rich repeat containing 39 Neighboring gene SAS-6 centriolar assembly protein Neighboring gene major facilitator superfamily domain containing 14A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA:m(4)X modification enzyme TRM13 homolog
Names
tRNA:m(4)X modification enzyme TRM13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042574.1 Reference lonStrDom2 Primary Assembly

    Range
    12157954..12163710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021525152.1 → XP_021380827.1  tRNA:m(4)X modification enzyme TRM13 homolog

    UniProtKB/TrEMBL
    A0A218VEK3
    Related
    ENSLSDP00000014905.1, ENSLSDT00000016941.1
    Conserved Domains (3) summary
    pfam05206
    Location:158 → 457
    TRM13; Methyltransferase TRM13
    pfam05253
    Location:50 → 73
    zf-U11-48K; U11-48K-like CHHC zinc finger
    pfam11722
    Location:12 → 38
    zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein
Nucleotide Protein
Heading Accession and Version

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