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RO60 Ro60, Y RNA binding protein [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110467795, updated on 15-Mar-2024

Summary

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Gene symbol
RO60
Gene description
Ro60, Y RNA binding protein
Locus tag
RLOC_00004810
See related
Ensembl:ENSLSDG00000010155
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
TROVE2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 8 NC_042574.1 (7638937..7682997)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018655028.1 (963529..1007588, complement)

Chromosome 8 - NC_042574.1Genomic Context describing neighboring genes Neighboring gene serpin family C member 1 Neighboring gene ring finger and CCCH-type domains 1 Neighboring gene ubiquitin C-terminal hydrolase L5 Neighboring gene glutaredoxin 2 Neighboring gene cell division cycle 73 Neighboring gene beta-1,3-galactosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60 kDa SS-A/Ro ribonucleoprotein
Names
SS-A/Ro ribonucleoprotein
TROVE domain family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042574.1 Reference lonStrDom2 Primary Assembly

    Range
    7638937..7682997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021525085.2 → XP_021380760.1  60 kDa SS-A/Ro ribonucleoprotein isoform X1

    UniProtKB/TrEMBL
    A0A218UUE2
    Conserved Domains (2) summary
    cd00198
    Location:368 → 486
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam05731
    Location:23 → 366
    TROVE; TROVE domain

  2. XM_021525087.2 → XP_021380762.1  60 kDa SS-A/Ro ribonucleoprotein isoform X1

    UniProtKB/TrEMBL
    A0A218UUE2
    Related
    ENSLSDP00000014057.1
    Conserved Domains (2) summary
    cd00198
    Location:368 → 486
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam05731
    Location:23 → 366
    TROVE; TROVE domain

  3. XM_021525086.1 → XP_021380761.1  60 kDa SS-A/Ro ribonucleoprotein isoform X1

    UniProtKB/TrEMBL
    A0A218UUE2
    Conserved Domains (2) summary
    cd00198
    Location:368 → 486
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam05731
    Location:23 → 366
    TROVE; TROVE domain

  4. XM_021525089.1 → XP_021380764.1  60 kDa SS-A/Ro ribonucleoprotein isoform X1

    UniProtKB/TrEMBL
    A0A218UUE2
    Conserved Domains (2) summary
    cd00198
    Location:368 → 486
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam05731
    Location:23 → 366
    TROVE; TROVE domain

  5. XM_021525091.1 → XP_021380766.1  60 kDa SS-A/Ro ribonucleoprotein isoform X2

    Conserved Domains (2) summary
    cd00198
    Location:96 → 214
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam05731
    Location:1 → 94
    TROVE; TROVE domain
Nucleotide Protein
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