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TPR translocated promoter region, nuclear basket protein [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110402363, updated on 15-Mar-2024

Summary

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Gene symbol
TPR
Gene description
translocated promoter region, nuclear basket protein
See related
Ensembl:ENSNMEG00000017323
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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See TPR in Genome Data Viewer
Location:
chromosome: 7
Exon count:
51
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 7 NC_034415.1 (10477978..10519839)

Chromosome 7 - NC_034415.1Genomic Context describing neighboring genes Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene proteoglycan 4 Neighboring gene hemicentin 1 Neighboring gene uncharacterized LOC110402217 Neighboring gene uncharacterized LOC110402218

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034415.1 Chromosome 7 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoprotein TPR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034415.1 Reference NumMel1.0 Primary Assembly

    Range
    10477978..10519839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021404366.1 → XP_021260041.1  nucleoprotein TPR isoform X1

    Related
    ENSNMEP00000020146.1, ENSNMET00000029406.1
    Conserved Domains (3) summary
    pfam07926
    Location:1046 → 1169
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    cl25732
    Location:820 → 1623
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27170
    Location:24 → 171
    DUF460; Protein of unknown function (DUF460)

  2. XM_021404367.1 → XP_021260042.1  nucleoprotein TPR isoform X2

    Conserved Domains (3) summary
    pfam07926
    Location:1046 → 1169
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    cl25732
    Location:820 → 1623
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27170
    Location:24 → 171
    DUF460; Protein of unknown function (DUF460)

  3. XM_021404368.1 → XP_021260043.1  nucleoprotein TPR isoform X3

    Conserved Domains (3) summary
    pfam07926
    Location:1046 → 1169
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    cl25732
    Location:820 → 1623
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27170
    Location:24 → 171
    DUF460; Protein of unknown function (DUF460)
Nucleotide Protein
Heading Accession and Version

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