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BBX BBX high mobility group box domain containing [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110400596, updated on 15-Mar-2024

Summary

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Gene symbol
BBX
Gene description
BBX high mobility group box domain containing
See related
Ensembl:ENSNMEG00000001014
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 1 NC_034409.1 (85166236..85297411)

Chromosome 1 - NC_034409.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110400588 Neighboring gene uncharacterized LOC110400593 Neighboring gene uncharacterized LOC110400595 Neighboring gene uncharacterized LOC110400689 Neighboring gene CD47 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034409.1 Chromosome 1 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034409.1 Reference NumMel1.0 Primary Assembly

    Range
    85166236..85297411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021400615.1 → XP_021256290.1  HMG box transcription factor BBX isoform X3

    Conserved Domains (2) summary
    cd01388
    Location:116 → 187
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:229 → 379
    DUF2028; Domain of unknown function (DUF2028)

  2. XM_021400677.1 → XP_021256352.1  HMG box transcription factor BBX isoform X9

    Conserved Domains (2) summary
    cd01388
    Location:59 → 130
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:172 → 322
    DUF2028; Domain of unknown function (DUF2028)

  3. XM_021400633.1 → XP_021256308.1  HMG box transcription factor BBX isoform X5

    Related
    ENSNMEP00000001867.1, ENSNMET00000003818.1
    Conserved Domains (2) summary
    cd01388
    Location:116 → 187
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:229 → 352
    DUF2028; Domain of unknown function (DUF2028)

  4. XM_021400601.1 → XP_021256276.1  HMG box transcription factor BBX isoform X1

    Conserved Domains (2) summary
    cd01388
    Location:116 → 187
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:229 → 379
    DUF2028; Domain of unknown function (DUF2028)

  5. XM_021400623.1 → XP_021256298.1  HMG box transcription factor BBX isoform X4

    Conserved Domains (2) summary
    cd01388
    Location:116 → 187
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:229 → 343
    DUF2028; Domain of unknown function (DUF2028)

  6. XM_021400670.1 → XP_021256345.1  HMG box transcription factor BBX isoform X8

    Conserved Domains (2) summary
    cd01388
    Location:116 → 187
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:229 → 379
    DUF2028; Domain of unknown function (DUF2028)

  7. XM_021400639.1 → XP_021256314.1  HMG box transcription factor BBX isoform X6

    Conserved Domains (2) summary
    cd01388
    Location:87 → 158
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:200 → 350
    DUF2028; Domain of unknown function (DUF2028)

  8. XM_021400608.1 → XP_021256283.1  HMG box transcription factor BBX isoform X2

    Conserved Domains (2) summary
    cd01388
    Location:101 → 172
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:214 → 364
    DUF2028; Domain of unknown function (DUF2028)

  9. XM_021400664.1 → XP_021256339.1  HMG box transcription factor BBX isoform X7

    Related
    ENSNMEP00000001873.1, ENSNMET00000003824.1
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 342
    DUF2028; Domain of unknown function (DUF2028)

  10. XM_021400649.1 → XP_021256324.1  HMG box transcription factor BBX isoform X7

    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 342
    DUF2028; Domain of unknown function (DUF2028)

  11. XM_021400694.1 → XP_021256369.1  HMG box transcription factor BBX isoform X10

    Conserved Domains (2) summary
    cd01388
    Location:1 → 67
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:109 → 259
    DUF2028; Domain of unknown function (DUF2028)

  12. XM_021400659.1 → XP_021256334.1  HMG box transcription factor BBX isoform X7

    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 342
    DUF2028; Domain of unknown function (DUF2028)

  13. XM_021400687.1 → XP_021256362.1  HMG box transcription factor BBX isoform X10

    Conserved Domains (2) summary
    cd01388
    Location:1 → 67
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:109 → 259
    DUF2028; Domain of unknown function (DUF2028)
Nucleotide Protein
Heading Accession and Version

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