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Sec13 SEC13 homolog, nuclear pore and COPII coat complex component [ Mus musculus (house mouse) ]

Gene ID: 110379, updated on 28-May-2016
Official Symbol
Sec13provided by MGI
Official Full Name
SEC13 homolog, nuclear pore and COPII coat complex componentprovided by MGI
Primary source
MGI:MGI:99832
See related
Ensembl:ENSMUSG00000030298 Vega:OTTMUSG00000023506
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sec13r; Sec13l1; 1110003H02Rik
Orthologs
Location:
6 E3; 6 52.84 cM
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (113728052..113740681, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113678046..113690675, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene TatD DNase domain containing 2 Neighboring gene microRNA 7042 Neighboring gene ghrelin Neighboring gene ATPase, Ca++ transporting, plasma membrane 2 Neighboring gene predicted gene 15083 Neighboring gene predicted gene, 36023

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport ISA
Inferred from Sequence Alignment
more info
PubMed 
mRNA transport IEA
Inferred from Electronic Annotation
more info
 
positive regulation of TOR signaling ISO
Inferred from Sequence Orthology
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
GATOR2 complex ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with kinetochore ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear envelope ISO
Inferred from Sequence Orthology
more info
 
nuclear pore ISO
Inferred from Sequence Orthology
more info
 
nuclear pore outer ring ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
protein complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein SEC13 homolog
Names
SEC13 homolog
SEC13 related
SEC13-like 1
SEC13-like protein 1
SEC13-related protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024206.4NP_077168.2  protein SEC13 homolog

    See identical proteins and their annotated locations for NP_077168.2

    Status: PROVISIONAL

    Source sequence(s)
    AK003354
    Consensus CDS
    CCDS39596.1
    UniProtKB/Swiss-Prot
    Q9D1M0
    Related
    ENSMUSP00000032440, OTTMUSP00000027601, ENSMUST00000032440, OTTMUST00000057250
    Conserved Domains (2) summary
    COG2319
    Location:6301
    WD40; WD40 repeat [General function prediction only]
    cl02567
    Location:10289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    113728052..113740681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    115553563..115566192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)