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Marchf1 membrane associated ring-CH-type finger 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110336587, updated on 15-Mar-2024

Summary

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Gene symbol
Marchf1
Gene description
membrane associated ring-CH-type finger 1
See related
Ensembl:MGP_PahariEiJ_G0021558
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Also known as
March1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 19 NC_034608.1 (80392281..81191413)

Chromosome 19 - NC_034608.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L24 pseudogene Neighboring gene U7 small nuclear RNA Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene U6 spliceosomal RNA Neighboring gene protein FAM133B pseudogene Neighboring gene translation machinery associated 16 homolog Neighboring gene transketolase like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034608.1 Chromosome 19 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034608.1 Reference PAHARI_EIJ_v1.1

    Range
    80392281..81191413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029532226.1 → XP_029388086.1  E3 ubiquitin-protein ligase MARCH1 isoform X1

    Related
    MGP_PahariEiJ_T0047456.1
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  2. XM_029532228.1 → XP_029388088.1  E3 ubiquitin-protein ligase MARCH1 isoform X2

    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  3. XM_029532227.1 → XP_029388087.1  E3 ubiquitin-protein ligase MARCH1 isoform X1

    Related
    MGP_PahariEiJ_P0047462, MGP_PahariEiJ_T0047462.1
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  4. XM_029532229.1 → XP_029388089.1  E3 ubiquitin-protein ligase MARCH1 isoform X3

    Related
    MGP_PahariEiJ_P0047465, MGP_PahariEiJ_T0047465.1
    Conserved Domains (1) summary
    cd16698
    Location:69 → 120
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins
Nucleotide Protein
Heading Accession and Version

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