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Csmd3 CUB and Sushi multiple domains 3 [ Mus pahari (shrew mouse) ]

Gene ID: 110334760, updated on 15-Mar-2024

Summary

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Gene symbol
Csmd3
Gene description
CUB and Sushi multiple domains 3
See related
Ensembl:MGP_PahariEiJ_G0019787
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
72
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 17 NC_034606.1 (13972492..15138211, complement)

Chromosome 17 - NC_034606.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 4B-like Neighboring gene ribosome biogenesis protein WDR12-like Neighboring gene small nucleolar RNA SNORA17 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene L-lactate dehydrogenase A chain-like Neighboring gene 40S ribosomal protein S29 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034606.1 Chromosome 17 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUB and sushi domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034606.1 Reference PAHARI_EIJ_v1.1

    Range
    13972492..15138211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021216672.2 → XP_021072331.1  CUB and sushi domain-containing protein 3 isoform X1

    Related
    MGP_PahariEiJ_P0041548, MGP_PahariEiJ_T0041548.1
    Conserved Domains (4) summary
    cd00033
    Location:664 → 718
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00041
    Location:1588 → 1695
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:1528 → 1584
    Sushi; Sushi repeat (SCR repeat)
    cl27761
    Location:3168 → 3407
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

  2. XM_029547950.1 → XP_029403810.1  CUB and sushi domain-containing protein 3 isoform X3

    Conserved Domains (3) summary
    cd00033
    Location:664 → 718
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:3098 → 3337
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:1588 → 1695
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  3. XM_029547951.1 → XP_029403811.1  CUB and sushi domain-containing protein 3 isoform X4

    Conserved Domains (3) summary
    cd00033
    Location:560 → 614
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:3064 → 3303
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:1484 → 1591
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  4. XM_029547949.1 → XP_029403809.1  CUB and sushi domain-containing protein 3 isoform X2

    Conserved Domains (4) summary
    cd00033
    Location:664 → 718
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00042
    Location:2105 → 2177
    CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
    PHA02927
    Location:3129 → 3368
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:1588 → 1695
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  5. XM_029547952.1 → XP_029403812.1  CUB and sushi domain-containing protein 3 isoform X5

    Related
    MGP_PahariEiJ_P0041546, MGP_PahariEiJ_T0041546.1
    Conserved Domains (3) summary
    cd00033
    Location:32 → 86
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:2536 → 2775
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:956 → 1063
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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