U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ccdc88a coiled-coil domain containing 88A [ Mus pahari (shrew mouse) ]

Gene ID: 110330479, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Ccdc88a
Gene description
coiled-coil domain containing 88A
See related
Ensembl:MGP_PahariEiJ_G0016734
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ccdc88a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
33
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 13 NC_034602.1 (1409350..1543666, complement)

Chromosome 13 - NC_034602.1Genomic Context describing neighboring genes Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene prolyl-tRNA synthetase associated domain-containing protein 1 Neighboring gene mesoderm induction early response protein 3 pseudogene Neighboring gene rRNA 2'-O-methyltransferase fibrillarin pseudogene Neighboring gene U6atac minor spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_034602.1 Chromosome 13 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
girdin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034602.1 Reference PAHARI_EIJ_v1.1

    Range
    1409350..1543666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021210606.2 → XP_021066265.1  girdin isoform X4

    Related
    MGP_PahariEiJ_P0029974, MGP_PahariEiJ_T0029974.1
    Conserved Domains (2) summary
    COG1196
    Location:474 → 1308
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:18 → 586
    HOOK; HOOK protein

  2. XM_021210605.2 → XP_021066264.1  girdin isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:474 → 1308
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:18 → 586
    HOOK; HOOK protein

  3. XM_029545255.1 → XP_029401115.1  girdin isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:474 → 1331
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:18 → 586
    HOOK; HOOK protein

  4. XM_029545254.1 → XP_029401114.1  girdin isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:474 → 1331
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:18 → 586
    HOOK; HOOK protein

RNA

  1. XR_003845015.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.