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Ptpn13 protein tyrosine phosphatase non-receptor type 13 [ Mus pahari (shrew mouse) ]

Gene ID: 110330242, updated on 15-Mar-2024

Summary

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Gene symbol
Ptpn13
Gene description
protein tyrosine phosphatase non-receptor type 13
See related
Ensembl:MGP_PahariEiJ_G0017244
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Ptpn13 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
48
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 13 NC_034602.1 (91681092..91859717)

Chromosome 13 - NC_034602.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L22 pseudogene Neighboring gene 60S ribosomal protein L31 pseudogene Neighboring gene developmental pluripotency-associated protein 5A pseudogene Neighboring gene uncharacterized LOC115065235 Neighboring gene solute carrier family 10 member 6 Neighboring gene chromosome 13 C4orf36 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034602.1 Chromosome 13 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034602.1 Reference PAHARI_EIJ_v1.1

    Range
    91681092..91859717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021210241.1 → XP_021065900.1  tyrosine-protein phosphatase non-receptor type 13

    Related
    MGP_PahariEiJ_P0032543, MGP_PahariEiJ_T0032543.1
    Conserved Domains (7) summary
    smart00194
    Location:2182 → 2434
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1488 → 1578
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:566 → 774
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 190
    KIND; kinase non-catalytic C-lobe domain
    cd00992
    Location:1082 → 1166
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam16599
    Location:1168 → 1356
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:770 → 870
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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