U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Six1 SIX homeobox 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110324290, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Six1
Gene description
SIX homeobox 1
See related
Ensembl:MGP_PahariEiJ_G0029598
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 7 NC_034596.1 (68518163..68522496, complement)

Chromosome 7 - NC_034596.1Genomic Context describing neighboring genes Neighboring gene chromosome 7 C14orf39 homolog Neighboring gene SIX homeobox 6 Neighboring gene SIX homeobox 4 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene MNAT1 component of CDK activating kinase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_034596.1 Chromosome 7 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homeobox protein SIX1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034596.1 Reference PAHARI_EIJ_v1.1

    Range
    68518163..68522496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021201728.1 → XP_021057387.1  homeobox protein SIX1

    Related
    MGP_PahariEiJ_P0082635, MGP_PahariEiJ_T0082635.1
    Conserved Domains (2) summary
    cd00086
    Location:129 → 180
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:9 → 118
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.