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Spty2d1 SPT2 chromatin protein domain containing 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110322260, updated on 15-Mar-2024

Summary

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Gene symbol
Spty2d1
Gene description
SPT2 chromatin protein domain containing 1
See related
Ensembl:MGP_PahariEiJ_G0013001
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Spty2d1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 1 NC_034590.1 (19680224..19697125, complement)

Chromosome 1 - NC_034590.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-10 pseudogene Neighboring gene mitochondrial sheath formation associated Neighboring gene transmembrane protein 86A Neighboring gene immunoglobulin superfamily member 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034590.1 Chromosome 1 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SPT2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034590.1 Reference PAHARI_EIJ_v1.1

    Range
    19680224..19697125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021198869.1 → XP_021054528.1  protein SPT2 homolog

    Related
    MGP_PahariEiJ_P0016601, MGP_PahariEiJ_T0016601.1
    Conserved Domains (3) summary
    smart00784
    Location:601 → 658
    SPT2; SPT2 chromatin protein
    cl26511
    Location:31 → 221
    Neuromodulin_N; Gap junction protein N-terminal region
    cl28033
    Location:216 → 531
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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