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Ecm2 extracellular matrix protein 2 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110307595, updated on 15-Mar-2024

Summary

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Gene symbol
Ecm2
Gene description
extracellular matrix protein 2
See related
Ensembl:MGP_CAROLIEiJ_G0018505
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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See Ecm2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 13 NC_034582.1 (44732770..44762081)

Chromosome 13 - NC_034582.1Genomic Context describing neighboring genes Neighboring gene BICD cargo adaptor 2 Neighboring gene inositol-pentakisphosphate 2-kinase Neighboring gene centromere protein P Neighboring gene asporin Neighboring gene osteomodulin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034582.1 Chromosome 13 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen V binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell-substrate adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034582.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    44732770..44762081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021179809.1 → XP_021035468.1  extracellular matrix protein 2

    UniProtKB/TrEMBL
    A0A6P5QVD3
    Related
    MGP_CAROLIEiJ_P0034306, MGP_CAROLIEiJ_T0034306.1
    Conserved Domains (4) summary
    PRK15370
    Location:357 → 597
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:309 → 332
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:98 → 152
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:308 → 369
    LRR_8; Leucine rich repeat

  2. XM_029468184.1 → XP_029324044.1  extracellular matrix protein 2

    UniProtKB/TrEMBL
    A0A6P5QVD3
    Conserved Domains (4) summary
    PRK15370
    Location:357 → 597
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:309 → 332
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:98 → 152
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:308 → 369
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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