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    CHAT choline O-acetyltransferase [ Homo sapiens (human) ]

    Gene ID: 1103, updated on 6-Jun-2013
    Official Symbol
    CHATprovided by HGNC
    Official Full Name
    choline O-acetyltransferaseprovided by HGNC
    Primary source
    HGNC:1912
    See related
    Ensembl:ENSG00000070748; HPRD:07510; MIM:118490; Vega:OTTHUMG00000018198
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CMS1A; CMS1A2; CHOACTASE
    Summary
    This gene encodes an enzyme which catalyzes the biosynthesis of the neurotransmitter acetylcholine. This gene product is a characteristic feature of cholinergic neurons, and changes in these neurons may explain some of the symptoms of Alzheimer's disease. Polymorphisms in this gene have been associated with Alzheimer's disease and mild cognitive impairment. Mutations in this gene are associated with congenital myasthenic syndrome associated with episodic apnea. Multiple transcript variants encoding different isoforms have been found for this gene, and some of these variants have been shown to encode more than one isoform. [provided by RefSeq, May 2010]
    Location :
    10q11.2
    Sequence :
    Chromosome: 10; NC_000010.10 (50817141..50873150)
    See CHAT in Epigenomics, MapViewer

    Chromosome 10 - NC_000010.10Genomic Context describing neighboring genes Neighboring gene heat shock 60kDa protein 1 (chaperonin) pseudogene 17 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 6 Neighboring gene piggyBac transposable element derived 3 Neighboring gene solute carrier family 18 (vesicular acetylcholine), member 3 Neighboring gene chromosome 10 open reading frame 53 Neighboring gene oxoglutarate dehydrogenase-like

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Familial infantile myasthenia

    Summary from GeneReviews: Congenital Myasthenic Syndromes Go to GeneReviews

    Disease Characteristics
    Congenital myasthenic syndromes (designated as CMS throughout this entry) are characterized by fatigable weakness of skeletal muscle (e.g., ocular, bulbar, limb muscles) with onset at or shortly after birth or in early childhood; rarely, symptoms may not manifest until later in childhood. Cardiac and smooth muscle are not involved. Severity and course of disease are highly variable, ranging from minor symptoms to progressive disabling weakness. In some subtypes of CMS, myasthenic symptoms may be mild, but sudden severe exacerbations of weakness or even sudden episodes of respiratory insufficiency may be precipitated by fever, infections, or excitement. Major findings of the neonatal onset subtype include: feeding difficulties; poor suck and cry; choking spells; eyelid ptosis; facial, bulbar, and generalized weakness. In addition arthrogryposis multiplex congenital may be present; respiratory insufficiency with sudden apnea and cyanosis may occur. Later childhood onset subtypes show abnormal muscle fatigability with difficulty in activities such as running or climbing stairs; motor milestones may be delayed; fluctuating eyelid ptosis and fixed or fluctuating extraocular muscle weakness are common presentations.
    Diagnosis Testing
    The diagnosis of CMS is based on clinical findings, a decremental EMG response of the compound muscle action potential (CMAP) on low-frequency (2-3 Hz) stimulation, absence of anti-acetylcholine receptor (AChR) and anti-MuSK antibodies in the serum, and lack of improvement of clinical symptoms with immunosuppressive therapy. Mutations in one of multiple genes encoding proteins expressed at the neuromuscular junction are currently known to be associated with subtypes of CMS, including the genes encoding different subunits of the acetylcholine receptor: CHRNE (epsilonAChR subunit) . CHRNA1 (alphaAChR subunit). CHRNB1 (betaAChR subunit). CHRND (deltaAChR-subunit). AGRN encoding agrin. CHAT encoding choline O-acetyltransferase. COLQ encoding acetylcholinesterase collagenic tail peptide. DOK7 encoding protein Dok-7 . GFPT1 encoding glucosamine--fructose-6-phosphate aminotransferase 1 . MUSK encoding muscle, skeletal receptor tyrosine protein kinase . RAPSN encoding rapsyn (43-kd receptor-associated protein of the synapse). SCN4A encoding the sodium channel protein type 4 subunit alpha.
    Genetic Counseling
    Congenital myasthenic syndromes are inherited in an autosomal recessive, or, less frequently, autosomal dominant manner. In autosomal recessive CMS (AR-CMS), the parents of an affected child are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. In autosomal dominant CMS (AD-CMS), some individuals have an affected parent while others have a de novo mutation. The proportion of cases caused by de novo mutations is unknown. Each child of an individual with AD-CMS has a 50% chance of inheriting the mutation. Prenatal testing for pregnancies at increased risk is possible through laboratories offering either testing for the gene of interest or custom testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P28329 Q9UQM7 CAMK2A    HPRD  PubMed  
    P28329 Q13555 CAMK2G    HPRD  PubMed  
    P28329 Q14511 NEDD9    HPRD  PubMed  
    P28329 P17252 PRKCA    HPRD  PubMed  
    P28329 P05771 PRKCB    HPRD  PubMed  
    P28329 Q05655 PRKCD    HPRD  PubMed  
    P28329 Q02156 PRKCE    HPRD  PubMed  
    P28329 P05129 PRKCG    HPRD  PubMed  
    P28329 Q05513 PRKCZ    HPRD  PubMed  
    • Acetylcholine Neurotransmitter Release Cycle, organism-specific biosystem (from REACTOME)
      Acetylcholine Neurotransmitter Release Cycle, organism-specific biosystemAcetylcholine neurotransmitter release cycle involves syntheis of choline, loading of clathrin scultpted synaptic vesicles, docking and priming of the acetyl choline loaded synaptic vesicles and then...
    • Acetylcholine Synthesis, organism-specific biosystem (from WikiPathways)
      Acetylcholine Synthesis, organism-specific biosystemAcetylcholine is an important neurotransmitter. It can be rapidly released in the synaptic cleft upon activation of the neuron. In the synaptic cleft the compound is degraded rapidly into choline and...
    • Biogenic Amine Synthesis, organism-specific biosystem (from WikiPathways)
      Biogenic Amine Synthesis, organism-specific biosystemBiogenic amines are one of two broad classes of classical neurotransmitters (the other being amino acids) and include: acetylcholine, serotonin, histamine, and the catecholamines epinephrine, norepin...
    • Cholinergic synapse, organism-specific biosystem (from KEGG)
      Cholinergic synapse, organism-specific biosystemAcetylcholine (ACh) is a neurotransmitter widely distributed in the central (and also peripheral, autonomic and enteric) nervous system (CNS). In the CNS, ACh facilitates many functions, such as lear...
    • Glycerophospholipid biosynthesis, organism-specific biosystem (from REACTOME)
      Glycerophospholipid biosynthesis, organism-specific biosystemGlycerophospholipids are important structural and functional components of biological membranes and constituents of serum lipoproteins and the pulmonary surfactant. In addition, glycerophospholipids...
    • Glycerophospholipid metabolism, organism-specific biosystem (from KEGG)
      Glycerophospholipid metabolism, organism-specific biosystem
      Glycerophospholipid metabolism
    • Glycerophospholipid metabolism, conserved biosystem (from KEGG)
      Glycerophospholipid metabolism, conserved biosystem
      Glycerophospholipid metabolism
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • Metabolism of lipids and lipoproteins, organism-specific biosystem (from REACTOME)
      Metabolism of lipids and lipoproteins, organism-specific biosystemLipids are hydrophobic but otherwise chemically diverse molecules that play a wide variety of roles in human biology. They include ketone bodies, fatty acids, triacylglycerols, phospholipids and sphi...
    • Neuronal System, organism-specific biosystem (from REACTOME)
      Neuronal System, organism-specific biosystemThe human brain contains at least 100 billion neurons, each with the ability to influence many other cells. Clearly, highly sophisticated and efficient mechanisms are needed to enable communication a...
    • Neurotransmitter Release Cycle, organism-specific biosystem (from REACTOME)
      Neurotransmitter Release Cycle, organism-specific biosystemNeurotransmitter is stored in the synaptic vesicle in the pre-synaptic terminal prior to its release in the synaptic cleft upon depolarization of the pre-synaptic membrane. The release of the neurotr...
    • Phospholipid metabolism, organism-specific biosystem (from REACTOME)
      Phospholipid metabolism, organism-specific biosystemPhospholipids contain a polar head group and two long-chain fatty acyl moieties, one of which is generally unsaturated. The head group is a glycerol or serine phosphate attached to a polar group such...
    • SIDS Susceptibility Pathways, organism-specific biosystem (from WikiPathways)
      SIDS Susceptibility Pathways, organism-specific biosystemIn this model, we provide an integrated view of Sudden Infant Death Syndrome (SIDS) at the level of implicated tissues, signaling networks and genetics. The purpose of this model is to serve as an ov...
    • Synthesis of PC, organism-specific biosystem (from REACTOME)
      Synthesis of PC, organism-specific biosystemDe novo (Kennedy pathway) synthesis of phosphatidylcholine (PC) involves phosphorylation of choline (Cho) to phosphocholine (PCho) followed by condensing with cytidine triphosphate (CTP) to form CDP-...
    • Transmission across Chemical Synapses, organism-specific biosystem (from REACTOME)
      Transmission across Chemical Synapses, organism-specific biosystemChemical synapses are specialized junctions that are used for communication between neurons, neurons and muscle or gland cells. The synapse involves a pre-synaptic neuron and a post-synaptic neuron,...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    choline O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    adult walking behavior IEA
    Inferred from Electronic Annotation
    more info
     
    dendrite development IEA
    Inferred from Electronic Annotation
    more info
     
    establishment of synaptic specificity at neuromuscular junction IEA
    Inferred from Electronic Annotation
    more info
     
    glycerophospholipid biosynthetic process TAS
    Traceable Author Statement
    more info
     
    neuromuscular synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
     
    neurotransmitter biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    neurotransmitter secretion TAS
    Traceable Author Statement
    more info
     
    phosphatidylcholine biosynthetic process TAS
    Traceable Author Statement
    more info
     
    phospholipid metabolic process TAS
    Traceable Author Statement
    more info
     
    rhythmic behavior IEA
    Inferred from Electronic Annotation
    more info
     
    rhythmic excitation IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    synaptic transmission TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    axon IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm TAS
    Traceable Author Statement
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    choline O-acetyltransferase
    Names
    choline O-acetyltransferase
    choline acetylase
    acetyl CoA:choline O-acetyltransferase
    NP_001136401.1
    NP_001136405.1
    NP_001136406.1
    NP_065574.3
    NP_066264.3
    NP_066265.3
    NP_066266.3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011797.1 RefSeqGene

      Range
      5001..61010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001142929.1NP_001136401.1  choline O-acetyltransferase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (M) contains alternate 5' exon M but uses a downstream start codon and encodes isoform 1. Transcript variants R, N1, N2, M and S encode isoform 1.
      Source sequence(s)
      AC073366, AF305907
      Consensus CDS
      CCDS7233.1
      UniProtKB/TrEMBL
      D3DX95
      UniProtKB/Swiss-Prot
      P28329
      Conserved Domains (1) summary
      pfam00755
      Location:13602
      Blast Score: 2048
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    2. NM_001142933.1NP_001136405.1  choline O-acetyltransferase isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (S) contains alternate 5' exons M and S in the 5' coding region, and uses an upstream start codon. The resulting protein (isoform 3) has a distinct N-terminus, compared to isoforms 1 and 2.
      Source sequence(s)
      AC073366, AF305908
      Consensus CDS
      CCDS44389.1
      UniProtKB/Swiss-Prot
      P28329
      Related
      ENSP00000378929, ENST00000395562
      Conserved Domains (1) summary
      pfam00755
      Location:49638
      Blast Score: 2053
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    3. NM_001142934.1NP_001136406.1  choline O-acetyltransferase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (S) contains alternate 5' exons M and S in the 5' coding region but uses a downstream start codon and encodes isoform 1. Transcript variants R, N1, N2, M and S encode isoform 1.
      Source sequence(s)
      AC073366, AF305908
      Consensus CDS
      CCDS7233.1
      UniProtKB/TrEMBL
      D3DX95
      UniProtKB/Swiss-Prot
      P28329
      Conserved Domains (1) summary
      pfam00755
      Location:13602
      Blast Score: 2048
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    4. NM_020549.4NP_065574.3  choline O-acetyltransferase isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (M) contains alternate 5' exon M, uses an upstream start codon, and encodes isoform 2.
      Source sequence(s)
      AC073366, AF305907
      Consensus CDS
      CCDS7232.1
      UniProtKB/Swiss-Prot
      P28329
      Related
      ENSP00000337103, OTTHUMP00000019583, ENST00000337653, OTTHUMT00000047997
      Conserved Domains (1) summary
      pfam00755
      Location:131720
      Blast Score: 2051
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    5. NM_020984.3NP_066264.3  choline O-acetyltransferase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (R) contains alternate 5' exon R and encodes isoform 1. Transcript variants R, N1, N2, M and S encode isoform 1.
      Source sequence(s)
      AC073366, AF305909
      Consensus CDS
      CCDS7233.1
      UniProtKB/TrEMBL
      D3DX95
      UniProtKB/Swiss-Prot
      P28329
      Related
      ENSP00000343486, OTTHUMP00000019584, ENST00000339797, OTTHUMT00000048003
      Conserved Domains (1) summary
      pfam00755
      Location:13602
      Blast Score: 2048
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    6. NM_020985.3NP_066265.3  choline O-acetyltransferase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (N1) contains alternate 5' exon N and uses an alternate splice site within alternate exon M, and encodes isoform 1. Transcript variants R, N1, N2, M and S encode isoform 1.
      Source sequence(s)
      AC073366, BC130615, D82340, S56138
      Consensus CDS
      CCDS7233.1
      UniProtKB/TrEMBL
      D3DX95
      UniProtKB/Swiss-Prot
      P28329
      UniProtKB/TrEMBL
      Q6LEN6
      Related
      ENSP00000345878, ENST00000351556
      Conserved Domains (1) summary
      pfam00755
      Location:13602
      Blast Score: 2048
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    7. NM_020986.3NP_066266.3  choline O-acetyltransferase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (N2) contains alternate 5' exon N and encodes isoform 1. Transcript variants R, N1, N2, M and S encode isoform 1.
      Source sequence(s)
      AC073366, BC130615, D82341, S56138
      Consensus CDS
      CCDS7233.1
      UniProtKB/TrEMBL
      D3DX95
      UniProtKB/Swiss-Prot
      P28329
      UniProtKB/TrEMBL
      Q6LEN5
      Related
      ENSP00000378926, ENST00000395559
      Conserved Domains (1) summary
      pfam00755
      Location:13602
      Blast Score: 2048
      Carn_acyltransf; Choline/Carnitine o-acyltransferase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000010.10 Reference GRCh37.p10 Primary Assembly

      Range
      50817141..50873150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000142.1 Alternate HuRef

      Range
      45081909..45138016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018921.1 Alternate CHM1_1.0

      Range
      51209372..51265389
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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