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Cnot3 CCR4-NOT transcription complex subunit 3 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110299110, updated on 15-Mar-2024

Summary

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Gene symbol
Cnot3
Gene description
CCR4-NOT transcription complex subunit 3
See related
Ensembl:MGP_CAROLIEiJ_G0029095
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 7 NC_034576.1 (412698..428379)

Chromosome 7 - NC_034576.1Genomic Context describing neighboring genes Neighboring gene TCF3 fusion partner Neighboring gene pre-mRNA processing factor 31 Neighboring gene leukocyte receptor cluster member 1 Neighboring gene transmembrane channel like 4 Neighboring gene transmembrane channel-like protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034576.1 Chromosome 7 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034576.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    412698..428379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021168720.2 → XP_021024379.1  CCR4-NOT transcription complex subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P5Q3U9
    Related
    MGP_CAROLIEiJ_P0077070, MGP_CAROLIEiJ_T0077070.1
    Conserved Domains (2) summary
    pfam04065
    Location:3 → 229
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    cl02384
    Location:12 → 749
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  2. XM_021168718.2 → XP_021024377.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QAW0
    Conserved Domains (2) summary
    COG5665
    Location:12 → 750
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 230
    Not3; Not1 N-terminal domain, CCR4-Not complex component

  3. XM_021168719.2 → XP_021024378.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QAW0
    Conserved Domains (2) summary
    COG5665
    Location:12 → 750
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 230
    Not3; Not1 N-terminal domain, CCR4-Not complex component

  4. XM_021168717.2 → XP_021024376.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QAW0
    Conserved Domains (2) summary
    COG5665
    Location:12 → 750
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 230
    Not3; Not1 N-terminal domain, CCR4-Not complex component

  5. XM_029479393.1 → XP_029335253.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QAW0
    Conserved Domains (2) summary
    COG5665
    Location:12 → 750
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 230
    Not3; Not1 N-terminal domain, CCR4-Not complex component

  6. XM_029479392.1 → XP_029335252.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QAW0
    Conserved Domains (2) summary
    COG5665
    Location:12 → 750
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 230
    Not3; Not1 N-terminal domain, CCR4-Not complex component
Nucleotide Protein
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