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Snrpn small nuclear ribonucleoprotein polypeptide N [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110297807, updated on 15-Mar-2024

Summary

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Gene symbol
Snrpn
Gene description
small nuclear ribonucleoprotein polypeptide N
See related
Ensembl:MGP_CAROLIEiJ_G0029815
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 7 NC_034576.1 (62127302..62239247, complement)

Chromosome 7 - NC_034576.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD64 Neighboring gene small nucleolar RNA SNORD107 Neighboring gene U6 spliceosomal RNA Neighboring gene SNRPN upstream open reading frame Neighboring gene uncharacterized LOC115031543

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034576.1 Chromosome 7 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein-associated protein N

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034576.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    62127302..62239247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021166813.2 → XP_021022472.1  small nuclear ribonucleoprotein-associated protein N

    UniProtKB/TrEMBL
    A0A6P5Q1R2
    Conserved Domains (1) summary
    cd01717
    Location:5 → 83
    Sm_B; Sm protein B

  2. XM_021166812.2 → XP_021022471.1  small nuclear ribonucleoprotein-associated protein N

    UniProtKB/TrEMBL
    A0A6P5Q1R2
    Related
    MGP_CAROLIEiJ_P0079906, MGP_CAROLIEiJ_T0079906.1
    Conserved Domains (1) summary
    cd01717
    Location:5 → 83
    Sm_B; Sm protein B
Nucleotide Protein
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