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Spen spen family transcriptional repressor [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110292742, updated on 15-Mar-2024

Summary

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Gene symbol
Spen
Gene description
spen family transcriptional repressor
See related
Ensembl:MGP_CAROLIEiJ_G0026745
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 4 NC_034573.1 (131152025..131222472, complement)

Chromosome 4 - NC_034573.1Genomic Context describing neighboring genes Neighboring gene steroid receptor associated and regulated protein Neighboring gene zinc finger and BTB domain containing 17 Neighboring gene uncharacterized LOC110293629 Neighboring gene filamin binding LIM protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034573.1 Chromosome 4 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
msx2-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034573.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    131152025..131222472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021160275.2 → XP_021015934.1  msx2-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A6P5PEI4
    Related
    MGP_CAROLIEiJ_P0065597, MGP_CAROLIEiJ_T0065597.1
    Conserved Domains (8) summary
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:336 → 409
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:436 → 509
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:510 → 586
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3446 → 3611
    SPOC; SPOC domain
    cl00489
    Location:2045 → 2126
    60KD_IMP; 60Kd inner membrane protein
    cl26464
    Location:1604 → 2034
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:616 → 1247
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_021160274.2 → XP_021015933.1  msx2-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A6P5PKK3
    Related
    MGP_CAROLIEiJ_P0065596, MGP_CAROLIEiJ_T0065596.1
    Conserved Domains (8) summary
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:336 → 409
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:436 → 509
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:510 → 586
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3469 → 3634
    SPOC; SPOC domain
    cl00489
    Location:2068 → 2149
    60KD_IMP; 60Kd inner membrane protein
    cl26464
    Location:1627 → 2057
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:633 → 1270
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_029475803.1 → XP_029331663.1  msx2-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A6P7QRF1

  4. XM_029475804.1 → XP_029331664.1  msx2-interacting protein isoform X4

    UniProtKB/TrEMBL
    A0A6P7QXY5
Nucleotide Protein
Heading Accession and Version

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