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Trim45 tripartite motif containing 45 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110291254, updated on 15-Mar-2024

Summary

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Gene symbol
Trim45
Gene description
tripartite motif containing 45
See related
Ensembl:MGP_CAROLIEiJ_G0025426
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 3 NC_034572.1 (95039738..95051222)

Chromosome 3 - NC_034572.1Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1A member 2 Neighboring gene uncharacterized LOC115030621 Neighboring gene V-set domain containing T cell activation inhibitor 1 Neighboring gene transcription termination factor 2 Neighboring gene CD101 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034572.1 Chromosome 3 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034572.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    95039738..95051222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021158288.1 → XP_021013947.1  tripartite motif-containing protein 45

    UniProtKB/TrEMBL
    A0A6P7QYH3
    Related
    MGP_CAROLIEiJ_P0059497, MGP_CAROLIEiJ_T0059497.1
    Conserved Domains (5) summary
    smart00502
    Location:237 → 357
    BBC; B-Box C-terminal domain
    smart00557
    Location:399 → 497
    IG_FLMN; Filamin-type immunoglobulin domains
    cd16588
    Location:27 → 100
    RING-HC_TRIM45-C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19785
    Location:188 → 230
    Bbox2_TRIM45_C-X; B-box-type 2 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19809
    Location:133 → 176
    Bbox1_TRIM45_C-X; B-box-type 1 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins

  2. XM_029474836.1 → XP_029330696.1  tripartite motif-containing protein 45

    UniProtKB/TrEMBL
    A0A6P7QYH3
    Conserved Domains (5) summary
    smart00502
    Location:237 → 357
    BBC; B-Box C-terminal domain
    smart00557
    Location:399 → 497
    IG_FLMN; Filamin-type immunoglobulin domains
    cd16588
    Location:27 → 100
    RING-HC_TRIM45-C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19785
    Location:188 → 230
    Bbox2_TRIM45_C-X; B-box-type 2 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19809
    Location:133 → 176
    Bbox1_TRIM45_C-X; B-box-type 1 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins

  3. XM_029474837.1 → XP_029330697.1  tripartite motif-containing protein 45

    UniProtKB/TrEMBL
    A0A6P7QYH3
    Related
    MGP_CAROLIEiJ_P0059498, MGP_CAROLIEiJ_T0059498.1
    Conserved Domains (5) summary
    smart00502
    Location:237 → 357
    BBC; B-Box C-terminal domain
    smart00557
    Location:399 → 497
    IG_FLMN; Filamin-type immunoglobulin domains
    cd16588
    Location:27 → 100
    RING-HC_TRIM45-C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19785
    Location:188 → 230
    Bbox2_TRIM45_C-X; B-box-type 2 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cd19809
    Location:133 → 176
    Bbox1_TRIM45_C-X; B-box-type 1 zinc finger found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
Nucleotide Protein
Heading Accession and Version

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