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Snph syntaphilin [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110289785, updated on 15-Mar-2024

Summary

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Gene symbol
Snph
Gene description
syntaphilin
See related
Ensembl:MGP_CAROLIEiJ_G0024437
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 2 NC_034571.1 (143482555..143524062, complement)

Chromosome 2 - NC_034571.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 1A Neighboring gene syndecan binding protein 2 Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene transmembrane protein 74B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034571.1 Chromosome 2 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaphilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034571.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    143482555..143524062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021156168.1 → XP_021011827.1  syntaphilin isoform X6

    UniProtKB/TrEMBL
    A0A6P5PFP9
    Related
    MGP_CAROLIEiJ_P0055174, MGP_CAROLIEiJ_T0055174.1
    Conserved Domains (1) summary
    pfam15290
    Location:20 → 284
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  2. XM_021156167.1 → XP_021011826.1  syntaphilin isoform X5

    UniProtKB/TrEMBL
    A0A6P5P5X4
    Related
    MGP_CAROLIEiJ_P0055172, MGP_CAROLIEiJ_T0055172.1
    Conserved Domains (1) summary
    pfam15290
    Location:20 → 320
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  3. XM_021156166.1 → XP_021011825.1  syntaphilin isoform X3

    UniProtKB/TrEMBL
    A0A6P5PBK1
    Related
    MGP_CAROLIEiJ_P0055171, MGP_CAROLIEiJ_T0055171.1
    Conserved Domains (1) summary
    pfam15290
    Location:53 → 353
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  4. XM_029474633.1 → XP_029330493.1  syntaphilin isoform X4

    UniProtKB/TrEMBL
    A0A6P7QN87

  5. XM_029474632.1 → XP_029330492.1  syntaphilin isoform X2

    UniProtKB/TrEMBL
    A0A6P7QQH3
    Conserved Domains (1) summary
    pfam15290
    Location:64 → 364
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  6. XM_029474631.1 → XP_029330491.1  syntaphilin isoform X1

    UniProtKB/TrEMBL
    A0A6P7QXX5
Nucleotide Protein
Heading Accession and Version

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