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Rfx3 regulatory factor X3 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110285439, updated on 15-Mar-2024

Summary

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Gene symbol
Rfx3
Gene description
regulatory factor X3
See related
Ensembl:MGP_CAROLIEiJ_G0022846
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
21
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 19 NC_034588.1 (24800955..25053329, complement)

Chromosome 19 - NC_034588.1Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis protein NSA2 homolog pseudogene Neighboring gene uncharacterized LOC110286112 Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene GLIS family zinc finger 3 Neighboring gene uncharacterized LOC110285689

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034588.1 Chromosome 19 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RFX3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034588.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    24800955..25053329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029472433.1 → XP_029328293.1  transcription factor RFX3 isoform X4

    UniProtKB/TrEMBL
    A0A6P7QNU3

  2. XM_029472434.1 → XP_029328294.1  transcription factor RFX3 isoform X4

    UniProtKB/TrEMBL
    A0A6P7QNU3

  3. XM_029472432.1 → XP_029328292.1  transcription factor RFX3 isoform X3

    UniProtKB/TrEMBL
    A0A6P5P0P5
    Related
    MGP_CAROLIEiJ_T0048466.1
    Conserved Domains (2) summary
    pfam02257
    Location:184 → 256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 133
    RFX1_trans_act; RFX1 transcription activation region

  4. XM_021151614.1 → XP_021007273.1  transcription factor RFX3 isoform X3

    UniProtKB/TrEMBL
    A0A6P5P0P5
    Conserved Domains (2) summary
    pfam02257
    Location:184 → 256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 133
    RFX1_trans_act; RFX1 transcription activation region

  5. XM_029472430.1 → XP_029328290.1  transcription factor RFX3 isoform X2

    UniProtKB/TrEMBL
    A0A6P7QRL0

  6. XM_029472429.1 → XP_029328289.1  transcription factor RFX3 isoform X1

    UniProtKB/TrEMBL
    A0A6P7QNT9
    Related
    MGP_CAROLIEiJ_P0048467, MGP_CAROLIEiJ_T0048467.1

  7. XM_029472431.1 → XP_029328291.1  transcription factor RFX3 isoform X2

    UniProtKB/TrEMBL
    A0A6P7QRL0

  8. XM_029472435.1 → XP_029328295.1  transcription factor RFX3 isoform X5

    UniProtKB/TrEMBL
    A0A6P7QUB7
    Related
    MGP_CAROLIEiJ_P0048468, MGP_CAROLIEiJ_T0048468.1
    Conserved Domains (2) summary
    pfam02257
    Location:184 → 256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 133
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
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