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ISL2 ISL LIM homeobox 2 [ Sus scrofa (pig) ]

Gene ID: 110261563, updated on 15-Mar-2024

Summary

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Official Symbol
ISL2provided by VGNC
Official Full Name
ISL LIM homeobox 2provided by VGNC
Primary source
VGNC:VGNC:89226
See related
Ensembl:ENSSSCG00000033348
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Restricted expression toward ovary (RPKM 1.2) See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (56571352..56579828)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene transmembrane protein 266 Neighboring gene uncharacterized LOC106507705 Neighboring gene electron transfer flavoprotein subunit alpha Neighboring gene S-phase cyclin A associated protein in the ER Neighboring gene reticulocalbin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010449.5 Chromosome 7 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
insulin gene enhancer protein ISL-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    56571352..56579828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099017.1 → XP_020954676.1  insulin gene enhancer protein ISL-2

    UniProtKB/TrEMBL
    A0A287BE81, A0A4X1TSN1, A0A8D1CL25
    Related
    ENSSSCP00000054636.1, ENSSSCT00000049281.3
    Conserved Domains (3) summary
    cd09366
    Location:27 → 81
    LIM1_Isl; The first LIM domain of Isl, a member of LHX protein family
    cd09471
    Location:89 → 143
    LIM2_Isl2; The second LIM domain of Isl2
    smart00389
    Location:191 → 247
    HOX; Homeodomain
Nucleotide Protein
Heading Accession and Version

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