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SIX3 SIX homeobox 3 [ Phascolarctos cinereus (koala) ]

Gene ID: 110218556, updated on 15-Mar-2024

Summary

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Gene symbol
SIX3
Gene description
SIX homeobox 3
See related
Ensembl:ENSPCIG00000037272
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344041.1 (6393794..6398298)

NW_018344041.1Genomic Context describing neighboring genes Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial pseudogene Neighboring gene 40S ribosomal protein S15 pseudogene Neighboring gene SIX homeobox 2 Neighboring gene uncharacterized LOC110218578

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344041 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344041.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    6393794..6398298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021001300.1 → XP_020856959.1  homeobox protein SIX3 isoform X1

    UniProtKB/TrEMBL
    A0A6P5LK93
    Conserved Domains (2) summary
    cd00086
    Location:206 → 254
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:85 → 198
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain

  2. XM_021001301.1 → XP_020856960.1  homeobox protein SIX3 isoform X2

    UniProtKB/TrEMBL
    A0A6P5LF28
    Related
    ENSPCIP00000042489.1, ENSPCIT00000055837.1
    Conserved Domains (2) summary
    cd00086
    Location:206 → 254
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:85 → 198
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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