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BBX BBX high mobility group box domain containing [ Phascolarctos cinereus (koala) ]

Gene ID: 110217481, updated on 15-Mar-2024

Summary

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Gene symbol
BBX
Gene description
BBX high mobility group box domain containing
See related
Ensembl:ENSPCIG00000011827
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See BBX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344031.1 (9191895..9384711)

NW_018344031.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S17 pseudogene Neighboring gene coiled-coil domain containing 54 Neighboring gene uncharacterized LOC110217529 Neighboring gene CD47 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344031 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344031.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    9191895..9384711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020999874.1 → XP_020855533.1  LOW QUALITY PROTEIN: HMG box transcription factor BBX

    UniProtKB/TrEMBL
    A0A6P5LC68
    Related
    ENSPCIP00000015204.2, ENSPCIT00000018787.2
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:191 → 279
    DUF2028; Domain of unknown function (DUF2028)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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