U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HMGB1 high mobility group box 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110215580, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HMGB1
Gene description
high mobility group box 1
See related
Ensembl:ENSPCIG00000021432
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344018.1 (5410953..5417613)

NW_018344018.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110215544 Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene uncharacterized LOC110215545 Neighboring gene uncharacterized LOC110215542 Neighboring gene uncharacterized LOC110215540

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018344018 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
high mobility group protein B1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344018.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5410953..5417613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020997186.1 → XP_020852845.1  high mobility group protein B1

    UniProtKB/TrEMBL
    A0A6P5L3D1
    Conserved Domains (2) summary
    cd21978
    Location:8 → 76
    HMG-box_HMGB_rpt1; first high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family
    cd21979
    Location:93 → 163
    HMG-box_HMGB_rpt2; second high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family

  2. XM_020997187.1 → XP_020852846.1  high mobility group protein B1

    UniProtKB/TrEMBL
    A0A6P5L3D1
    Related
    ENSPCIP00000028684.1, ENSPCIT00000035330.2
    Conserved Domains (2) summary
    cd21978
    Location:8 → 76
    HMG-box_HMGB_rpt1; first high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family
    cd21979
    Location:93 → 163
    HMG-box_HMGB_rpt2; second high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.