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PATZ1 POZ/BTB and AT hook containing zinc finger 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110215234, updated on 15-Mar-2024

Summary

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Gene symbol
PATZ1
Gene description
POZ/BTB and AT hook containing zinc finger 1
See related
Ensembl:ENSPCIG00000033378
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344016.1 (7839075..7864789, complement)

NW_018344016.1Genomic Context describing neighboring genes Neighboring gene LIM domain kinase 2 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344016 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: POZ-, AT hook-, and zinc finger-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344016.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    7839075..7864789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020996547.1 → XP_020852206.1  LOW QUALITY PROTEIN: POZ-, AT hook-, and zinc finger-containing protein 1

    UniProtKB/TrEMBL
    A0A6P5L9D6
    Related
    ENSPCIP00000048264.1, ENSPCIT00000058477.1
    Conserved Domains (6) summary
    COG5048
    Location:399 → 536
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:375 → 395
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:625 → 646
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:375 → 395
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:47 → 176
    BTB; BTB/POZ domain
    pfam16637
    Location:554 → 622
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
Nucleotide Protein
Heading Accession and Version

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