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SCAF4 SR-related CTD associated factor 4 [ Phascolarctos cinereus (koala) ]

Gene ID: 110214885, updated on 15-Mar-2024

Summary

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Gene symbol
SCAF4
Gene description
SR-related CTD associated factor 4
See related
Ensembl:ENSPCIG00000028183
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344013.1 (4633115..4742235)

NW_018344013.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene ADP/ATP translocase 3-like Neighboring gene superoxide dismutase 1 Neighboring gene SPRY domain-containing protein 7 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344013 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II C-terminal domain phosphoserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor, arginine/serine-rich 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344013.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    4633115..4742235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020995991.1 → XP_020851650.1  splicing factor, arginine/serine-rich 15 isoform X3

    UniProtKB/TrEMBL
    A0A6P5L093
    Conserved Domains (5) summary
    smart00582
    Location:6 → 134
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    cd12461
    Location:476 → 556
    RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
    pfam08648
    Location:909 → 1033
    DUF1777; Protein of unknown function (DUF1777)
    cl25764
    Location:222 → 373
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:124 → 280
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_020995990.1 → XP_020851649.1  splicing factor, arginine/serine-rich 15 isoform X2

    UniProtKB/TrEMBL
    A0A6P5L4D7
    Conserved Domains (5) summary
    smart00582
    Location:6 → 134
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    cd12461
    Location:475 → 555
    RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
    pfam08648
    Location:930 → 1054
    DUF1777; Protein of unknown function (DUF1777)
    cl25764
    Location:222 → 372
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:124 → 279
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  3. XM_020995992.1 → XP_020851651.1  splicing factor, arginine/serine-rich 15 isoform X4

    UniProtKB/TrEMBL
    A0A6P5L7T1
    Conserved Domains (4) summary
    smart00582
    Location:6 → 134
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    cd12461
    Location:417 → 497
    RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
    pfam08648
    Location:872 → 996
    DUF1777; Protein of unknown function (DUF1777)
    cl25764
    Location:209 → 314
    PAT1; Topoisomerase II-associated protein PAT1

  4. XM_020995989.1 → XP_020851648.1  splicing factor, arginine/serine-rich 15 isoform X1

    UniProtKB/TrEMBL
    A0A6P5L092
    Related
    ENSPCIP00000038306.2, ENSPCIT00000047144.2
    Conserved Domains (4) summary
    smart00582
    Location:6 → 134
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    cd12461
    Location:476 → 556
    RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
    pfam08648
    Location:931 → 1055
    DUF1777; Protein of unknown function (DUF1777)
    cl25764
    Location:222 → 373
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
Heading Accession and Version

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