U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110211403, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
RBCK1
Gene description
RANBP2-type and C3HC4-type zinc finger containing 1
See related
Ensembl:ENSPCIG00000008252
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RBCK1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018343991.1 (10137244..10172326, complement)

NW_018343991.1Genomic Context describing neighboring genes Neighboring gene transcription factor 15 Neighboring gene casein kinase 2 alpha 1 Neighboring gene TBC1 domain family member 20 Neighboring gene uncharacterized LOC110211323 Neighboring gene uncharacterized LOC110211322 Neighboring gene tribbles pseudokinase 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018343991 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein linear polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of LUBAC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ranBP-type and C3HC4-type zinc finger-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018343991.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    10137244..10172326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020990675.1 → XP_020846334.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P5KN20
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:354 → 414
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins

  2. XM_020990674.1 → XP_020846333.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5KL11
    Related
    ENSPCIP00000010139.2, ENSPCIT00000012706.2
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:354 → 410
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins

  3. XM_020990672.1 → XP_020846331.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5KPN4
    Related
    ENSPCIP00000010143.2, ENSPCIT00000012710.2
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:376 → 410
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins

  4. XM_020990670.1 → XP_020846329.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5KPN4
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:376 → 410
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins

  5. XM_020990673.1 → XP_020846332.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5KPN4
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:376 → 410
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins

  6. XM_020990671.1 → XP_020846330.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5KPN4
    Conserved Domains (5) summary
    smart00547
    Location:203 → 223
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:203 → 222
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam01485
    Location:376 → 410
    IBR; IBR domain, a half RING-finger domain
    cd16633
    Location:284 → 338
    mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
    cl00155
    Location:57 → 131
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.