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SYTL1 synaptotagmin like 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110206148, updated on 15-Mar-2024

Summary

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Gene symbol
SYTL1
Gene description
synaptotagmin like 1
See related
Ensembl:ENSPCIG00000024846
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018343966.1 (6543502..6556475)

NW_018343966.1Genomic Context describing neighboring genes Neighboring gene WD and tetratricopeptide repeats 1 Neighboring gene transmembrane protein 222 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene ficolin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018343966 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018343966.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    6543502..6556475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020983244.1 → XP_020838903.1  synaptotagmin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5K105
    Conserved Domains (3) summary
    cd04020
    Location:419 → 575
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:285 → 406
    C2; C2 domain
    cl22851
    Location:14 → 61
    PHD_SF; PHD finger superfamily

  2. XM_020983247.1 → XP_020838906.1  synaptotagmin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5K1V6
    Related
    ENSPCIP00000033485.2, ENSPCIT00000041220.2
    Conserved Domains (3) summary
    cd04020
    Location:411 → 567
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:277 → 398
    C2; C2 domain
    cl22851
    Location:14 → 61
    PHD_SF; PHD finger superfamily

  3. XM_020983246.1 → XP_020838905.1  synaptotagmin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5K105
    Conserved Domains (3) summary
    cd04020
    Location:419 → 575
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:285 → 406
    C2; C2 domain
    cl22851
    Location:14 → 61
    PHD_SF; PHD finger superfamily

  4. XM_020983248.1 → XP_020838907.1  synaptotagmin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P5K1R0
    Conserved Domains (2) summary
    cd04020
    Location:313 → 469
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08393
    Location:179 → 300
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
Nucleotide Protein
Heading Accession and Version

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