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SUPT20H SPT20 homolog, SAGA complex component [ Phascolarctos cinereus (koala) ]

Gene ID: 110195246, updated on 15-Mar-2024

Summary

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Gene symbol
SUPT20H
Gene description
SPT20 homolog, SAGA complex component
See related
Ensembl:ENSPCIG00000021637
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344130.1 (5787991..5849571, complement)

NW_018344130.1Genomic Context describing neighboring genes Neighboring gene SMAD family member 9 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene exosome component 8 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene V-type proton ATPase subunit E 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344130 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344130.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5787991..5849571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020967892.1 → XP_020823551.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  2. XM_020967894.1 → XP_020823553.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  3. XM_020967906.1 → XP_020823565.1  transcription factor SPT20 homolog isoform X12

    UniProtKB/TrEMBL
    A0A6P5INB9
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  4. XM_020967890.1 → XP_020823549.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  5. XM_020967896.1 → XP_020823555.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A6P5INA9
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  6. XM_020967908.1 → XP_020823567.1  transcription factor SPT20 homolog isoform X14

    UniProtKB/TrEMBL
    A0A6P5IN65
    Related
    ENSPCIP00000029037.1, ENSPCIT00000035726.2
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  7. XM_020967907.1 → XP_020823566.1  transcription factor SPT20 homolog isoform X13

    UniProtKB/TrEMBL
    A0A6P5IX69
    Related
    ENSPCIP00000046576.1, ENSPCIT00000055947.1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  8. XM_020967895.1 → XP_020823554.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6P5IYA6
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  9. XM_020967904.1 → XP_020823563.1  transcription factor SPT20 homolog isoform X11

    UniProtKB/TrEMBL
    A0A6P5IR64
    Related
    ENSPCIP00000048526.1, ENSPCIT00000056239.1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  10. XM_020967902.1 → XP_020823561.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A6P5IX64
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  11. XM_020967898.1 → XP_020823557.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A6P5IN57
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  12. XM_020967900.1 → XP_020823559.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A6P5IYB1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  13. XM_020967899.1 → XP_020823558.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A6P5IR61
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  14. XM_020967897.1 → XP_020823556.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A6P5IX60
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  15. XM_020967889.1 → XP_020823548.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  16. XM_020967901.1 → XP_020823560.1  transcription factor SPT20 homolog isoform X8

    UniProtKB/TrEMBL
    A0A6P5INB4
    Conserved Domains (1) summary
    pfam12090
    Location:8 → 147
    Spt20; Spt20 family

  17. XM_020967893.1 → XP_020823552.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  18. XM_020967891.1 → XP_020823550.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5IR52
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  19. XM_020967903.1 → XP_020823562.1  transcription factor SPT20 homolog isoform X10

    UniProtKB/TrEMBL
    A0A6P5IN62
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family
Nucleotide Protein
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