U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KDM6B lysine demethylase 6B [ Phascolarctos cinereus (koala) ]

Gene ID: 110194281, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
KDM6B
Gene description
lysine demethylase 6B
See related
Ensembl:ENSPCIG00000004435
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See KDM6B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344119.1 (5301247..5329007, complement)

NW_018344119.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 88 Neighboring gene N-alpha-acetyltransferase 38, NatC auxiliary subunit Neighboring gene dynein axonemal heavy chain 2 Neighboring gene ephrin B3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018344119 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27me2/H3K27me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysine-specific demethylase 6B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344119.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    5301247..5329007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020966481.1 → XP_020822140.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A6P5IJI2
    Related
    ENSPCIP00000005337.2, ENSPCIT00000006703.2
    Conserved Domains (4) summary
    pfam02373
    Location:1331 → 1439
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:1297 → 1361
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:105 → 135
    TPR; TPR repeat [structural motif]
    pfam10243
    Location:880 → 1089
    MIP-T3; Microtubule-binding protein MIP-T3

  2. XM_020966479.1 → XP_020822138.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A6P5IJI2
    Conserved Domains (4) summary
    pfam02373
    Location:1331 → 1439
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:1297 → 1361
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:105 → 135
    TPR; TPR repeat [structural motif]
    pfam10243
    Location:880 → 1089
    MIP-T3; Microtubule-binding protein MIP-T3

  3. XM_020966478.1 → XP_020822137.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A6P5IJI2
    Conserved Domains (4) summary
    pfam02373
    Location:1331 → 1439
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:1297 → 1361
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:105 → 135
    TPR; TPR repeat [structural motif]
    pfam10243
    Location:880 → 1089
    MIP-T3; Microtubule-binding protein MIP-T3

  4. XM_020966480.1 → XP_020822139.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A6P5IJI2
    Related
    ENSPCIP00000005344.2, ENSPCIT00000006712.2
    Conserved Domains (4) summary
    pfam02373
    Location:1331 → 1439
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:1297 → 1361
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:105 → 135
    TPR; TPR repeat [structural motif]
    pfam10243
    Location:880 → 1089
    MIP-T3; Microtubule-binding protein MIP-T3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.