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mib1 MIB E3 ubiquitin protein ligase 1 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110170350, updated on 15-Mar-2024

Summary

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Gene symbol
mib1
Gene description
MIB E3 ubiquitin protein ligase 1
Locus tag
NL108_003358
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571095.1 (20513788..20564357)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018358624.1 (322656..372408, complement)

NW_026571095.1Genomic Context describing neighboring genes Neighboring gene histone H2A-like Neighboring gene abhydrolase domain containing 3, phospholipase Neighboring gene GATA binding protein 6 Neighboring gene Cdk5 and Abl enzyme substrate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase mib1
Names
mindbomb E3 ubiquitin protein ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571095.1 Reference ASM2622593v1 Primary Assembly

    Range
    20513788..20564357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020935991.2 → XP_020791650.2  E3 ubiquitin-protein ligase mib1 isoform X1

  2. XM_055151731.1 → XP_055007706.1  E3 ubiquitin-protein ligase mib1 isoform X2

  3. XM_020935992.2 → XP_020791651.1  E3 ubiquitin-protein ligase mib1 isoform X4

    Conserved Domains (9) summary
    cd00204
    Location:524 → 652
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:83 → 127
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    sd00045
    Location:464 → 527
    ANK; ANK repeat [structural motif]
    pfam06701
    Location:154 → 218
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:670 → 769
    Ank_2; Ankyrin repeats (3 copies)
    cd16724
    Location:816 → 852
    RING1-HC_MIB1; RING finger 1, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cd16725
    Location:863 → 899
    RING2-HC_MIB1; RING finger 2, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cd16727
    Location:975 → 1016
    RING3-HC_MIB1; RING finger 3, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cl26073
    Location:433 → 710
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_020935993.2 → XP_020791652.1  E3 ubiquitin-protein ligase mib1 isoform X5

    Conserved Domains (9) summary
    cd00204
    Location:524 → 652
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:83 → 127
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    sd00045
    Location:464 → 527
    ANK; ANK repeat [structural motif]
    pfam06701
    Location:154 → 218
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:670 → 769
    Ank_2; Ankyrin repeats (3 copies)
    cd16724
    Location:816 → 852
    RING1-HC_MIB1; RING finger 1, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cd16725
    Location:863 → 899
    RING2-HC_MIB1; RING finger 2, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cd16727
    Location:974 → 1015
    RING3-HC_MIB1; RING finger 3, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
    cl26073
    Location:433 → 710
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_055151732.1 → XP_055007707.1  E3 ubiquitin-protein ligase mib1 isoform X3

Nucleotide Protein
Heading Accession and Version

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