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trpc1 transient receptor potential cation channel, subfamily C, member 1 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110170046, updated on 15-Mar-2024

Summary

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Gene symbol
trpc1
Gene description
transient receptor potential cation channel, subfamily C, member 1
Locus tag
NL108_001865
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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See trpc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571070.1 (22745453..22763805)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018358427.1 (2239944..2260826, complement)

NW_026571070.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b Neighboring gene procollagen C-endopeptidase enhancer 2b Neighboring gene nephronophthisis 3 Neighboring gene U2 snRNP-associated SURP domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571070.1 Reference ASM2622593v1 Primary Assembly

    Range
    22745453..22763805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055150954.1 → XP_055006929.1  short transient receptor potential channel 1 isoform X2

  2. XM_055150953.1 → XP_055006928.1  short transient receptor potential channel 1 isoform X1

  3. XM_055150955.1 → XP_055006930.1  short transient receptor potential channel 1 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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