U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

prpf40a PRP40 pre-mRNA processing factor 40 homolog A [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110166582, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
prpf40a
Gene description
PRP40 pre-mRNA processing factor 40 homolog A
Locus tag
NL108_007699
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026570970.1 (14179168..14208617)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018356909.1 (1290510..1319064)

NW_026570970.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 Neighboring gene uncharacterized LOC110166527 Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate a Neighboring gene 5S ribosomal RNA Neighboring gene formin-like 2a Neighboring gene small ubiquitin like modifier 3b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pre-mRNA-processing factor 40 homolog A
Names
pre-mRNA processing factor 40 homolog A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026570970.1 Reference ASM2622593v1 Primary Assembly

    Range
    14179168..14208617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055152852.1 → XP_055008827.1  pre-mRNA-processing factor 40 homolog A isoform X2

  2. XM_020931847.2 → XP_020787506.1  pre-mRNA-processing factor 40 homolog A isoform X1

    Conserved Domains (2) summary
    smart00441
    Location:651 → 705
    FF; Contains two conserved F residues
    cl00157
    Location:131 → 595
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.