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susd1 sushi domain containing 1 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110163364, updated on 15-Mar-2024

Summary

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Gene symbol
susd1
Gene description
sushi domain containing 1
Locus tag
NL108_011039
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
zebrafish all
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Genomic context

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See susd1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571353.1 (11099943..11116524)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018355647.1 (4077854..4094319, complement)

NW_026571353.1Genomic Context describing neighboring genes Neighboring gene neuropeptide FF receptor 1 like 2 Neighboring gene paralemmin-2 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC129411232 Neighboring gene uncharacterized LOC110163348 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571353.1 Reference ASM2622593v1 Primary Assembly

    Range
    11099943..11116524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055161408.1 → XP_055017383.1  sushi domain-containing protein 1 isoform X6

  2. XM_055161404.1 → XP_055017379.1  sushi domain-containing protein 1 isoform X1

  3. XM_055161405.1 → XP_055017380.1  sushi domain-containing protein 1 isoform X2

  4. XM_055161406.1 → XP_055017381.1  sushi domain-containing protein 1 isoform X3

  5. XM_055161407.1 → XP_055017382.1  sushi domain-containing protein 1 isoform X5

  6. XM_055161409.1 → XP_055017384.1  sushi domain-containing protein 1 isoform X7

  7. XM_020928310.2 → XP_020783969.1  sushi domain-containing protein 1 isoform X4

    Conserved Domains (3) summary
    cd00033
    Location:239 → 295
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:185 → 216
    EGF_CA; Calcium-binding EGF-like domain
    cl27761
    Location:313 → 528
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
Nucleotide Protein
Heading Accession and Version

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