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pdlim1 PDZ and LIM domain 1 (elfin) [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110162109, updated on 15-Mar-2024

Summary

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Gene symbol
pdlim1
Gene description
PDZ and LIM domain 1 (elfin)
Locus tag
NL108_015114
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571404.1 (13110996..13123184)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018346302.1 (1334453..1346569)

NW_026571404.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide 3-kinase adapter protein 1 Neighboring gene sorbin and SH3 domain-containing protein 1 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 12 Neighboring gene sirtuin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571404.1 Reference ASM2622593v1 Primary Assembly

    Range
    13110996..13123184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020926972.2 → XP_020782631.2  PDZ and LIM domain protein 1

Nucleotide Protein
Heading Accession and Version

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