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UBQLN1 ubiquilin 1 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110149018, updated on 15-Mar-2024

Summary

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Gene symbol
UBQLN1
Gene description
ubiquilin 1
See related
EnsemblRapid:ENSOVIG00010004608
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018336489.1 (87203..143451)

NW_018336489.1Genomic Context describing neighboring genes Neighboring gene G kinase anchoring protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018336489 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018336489.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    87203..143451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020911337.1 → XP_020766996.1  ubiquilin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Z173
    Related
    ENSOVIP00010006411.1, ENSOVIT00010007239.1
    Conserved Domains (3) summary
    smart00727
    Location:390 → 422
    STI1; Heat shock chaperonin-binding motif
    cd01808
    Location:37 → 107
    hPLIC_N; Ubiquitin-like domain of hPLIC-1 and hPLIC2
    cd14399
    Location:546 → 585
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

  2. XM_020911338.1 → XP_020766997.1  ubiquilin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0Z0N4
    Related
    ENSOVIP00010006429.1, ENSOVIT00010007264.1
    Conserved Domains (3) summary
    smart00727
    Location:182 → 219
    STI1; Heat shock chaperonin-binding motif
    cd01808
    Location:37 → 107
    hPLIC_N; Ubiquitin-like domain of hPLIC-1 and hPLIC2
    cd14399
    Location:518 → 557
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
Nucleotide Protein
Heading Accession and Version

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