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PCDH20 protocadherin 20 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110148344, updated on 15-Mar-2024

Summary

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Gene symbol
PCDH20
Gene description
protocadherin 20
See related
EnsemblRapid:ENSOVIG00010025557
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018336318.1 (88109..93422, complement)

NW_018336318.1Genomic Context describing neighboring genes Neighboring gene transaldolase pseudogene Neighboring gene ubiquitin carboxyl-terminal hydrolase isozyme L1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018336318 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018336318.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    88109..93422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020910286.1 → XP_020765945.1  protocadherin-20

    UniProtKB/TrEMBL
    A0A6J0YVV8
    Related
    ENSOVIP00010036291.1, ENSOVIT00010041097.1
    Conserved Domains (2) summary
    cd11304
    Location:541 → 635
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:68 → 152
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
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