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HMGB3 high mobility group box 3 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110143485, updated on 15-Mar-2024

Summary

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Gene symbol
HMGB3
Gene description
high mobility group box 3
See related
EnsemblRapid:ENSOVIG00010003484
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018335487.1 (1015584..1021965, complement)

NW_018335487.1Genomic Context describing neighboring genes Neighboring gene vacuolar ATPase assembly factor VMA21 Neighboring gene G protein-coupled receptor 50 Neighboring gene CD99 molecule like 2 Neighboring gene myotubularin related protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018335487 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018335487.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    1015584..1021965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020903109.1 → XP_020758768.1  high mobility group protein B3 isoform X1

    UniProtKB/TrEMBL
    A0A6J0YAM9
    Conserved Domains (2) summary
    pfam00505
    Location:110 → 177
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:30 → 95
    HMG_box_2; HMG-box domain

  2. XM_020903111.1 → XP_020758770.1  high mobility group protein B3 isoform X2

    UniProtKB/TrEMBL
    A0A6J0YAU5
    Related
    ENSOVIP00010004911.1, ENSOVIT00010005520.1
    Conserved Domains (2) summary
    pfam00505
    Location:93 → 160
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:13 → 78
    HMG_box_2; HMG-box domain

  3. XM_020903110.1 → XP_020758769.1  high mobility group protein B3 isoform X2

    UniProtKB/TrEMBL
    A0A6J0YAU5
    Conserved Domains (2) summary
    pfam00505
    Location:93 → 160
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:13 → 78
    HMG_box_2; HMG-box domain
Nucleotide Protein
Heading Accession and Version

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