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TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110142766, updated on 15-Mar-2024

Summary

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Gene symbol
TRANK1
Gene description
tetratricopeptide repeat and ankyrin repeat containing 1
See related
EnsemblRapid:ENSOVIG00010020450
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018335387.1 (1273197..1368063)

NW_018335387.1Genomic Context describing neighboring genes Neighboring gene EPM2A interacting protein 1 Neighboring gene uncharacterized protein C17orf62 homolog Neighboring gene uncharacterized LOC110142767 Neighboring gene doublecortin like kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018335387 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TPR and ankyrin repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018335387.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    1273197..1368063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020902123.1 → XP_020757782.1  TPR and ankyrin repeat-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y848
    Conserved Domains (3) summary
    cd00204
    Location:518 → 648
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:7 → 35
    TPR; TPR repeat [structural motif]
    sd00045
    Location:255 → 291
    ANK; ANK repeat [structural motif]

  2. XM_020902121.1 → XP_020757780.1  TPR and ankyrin repeat-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y848
    Conserved Domains (3) summary
    cd00204
    Location:518 → 648
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:7 → 35
    TPR; TPR repeat [structural motif]
    sd00045
    Location:255 → 291
    ANK; ANK repeat [structural motif]

  3. XM_020902127.1 → XP_020757786.1  TPR and ankyrin repeat-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6J0Y994
    Conserved Domains (2) summary
    cd00204
    Location:405 → 535
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:142 → 178
    ANK; ANK repeat [structural motif]

  4. XM_020902122.1 → XP_020757781.1  TPR and ankyrin repeat-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y848
    Conserved Domains (3) summary
    cd00204
    Location:518 → 648
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:7 → 35
    TPR; TPR repeat [structural motif]
    sd00045
    Location:255 → 291
    ANK; ANK repeat [structural motif]

  5. XM_020902119.1 → XP_020757778.1  TPR and ankyrin repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Y825
    Related
    ENSOVIP00010028879.1, ENSOVIT00010032721.1
    Conserved Domains (3) summary
    cd00204
    Location:548 → 678
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:37 → 65
    TPR; TPR repeat [structural motif]
    sd00045
    Location:285 → 321
    ANK; ANK repeat [structural motif]

  6. XM_020902120.1 → XP_020757779.1  TPR and ankyrin repeat-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0Y895
    Conserved Domains (4) summary
    cd00204
    Location:531 → 661
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:37 → 65
    TPR; TPR repeat [structural motif]
    sd00045
    Location:268 → 304
    ANK; ANK repeat [structural motif]
    cl26005
    Location:11 → 120
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  7. XM_020902124.1 → XP_020757783.1  TPR and ankyrin repeat-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y830
    Conserved Domains (3) summary
    cd00204
    Location:483 → 613
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:32 → 62
    TPR; TPR repeat [structural motif]
    sd00045
    Location:220 → 256
    ANK; ANK repeat [structural motif]

  8. XM_020902125.1 → XP_020757784.1  TPR and ankyrin repeat-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6J0Y899
    Conserved Domains (3) summary
    cd00204
    Location:466 → 596
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:15 → 45
    TPR; TPR repeat [structural motif]
    sd00045
    Location:203 → 239
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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